// strdup() from string.h
#ifdef __STDC_ALLOC_LIB__
#define __STDC_WANT_LIB_EXT2__ 1
#else
#undef _POSIX_C_SOURCE
#define _POSIX_C_SOURCE 200809L
#endif

#ifdef HAVE_CONFIG_H
#include "config.h"
#endif

#include <assert.h>
#include <ctype.h>
#include <errno.h>
#include <fcntl.h>
#include <limits.h>
#include <stdbool.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <sys/stat.h>
#include <sys/types.h>

// On Windows, define ssize_t manually
#ifdef _WIN32
#define ssize_t __int64
#include <io.h>
#else
#include <unistd.h>
#endif

#ifdef HAVE_SYS_TIME_H
#include <sys/time.h>  // gettimeofday()
#endif

#include "error.h"
#include "file.h"

#ifdef CDI
#include "namespace.h"
#endif

#ifndef O_BINARY
#define O_BINARY 0
#endif

#ifdef HAVE_MMAP
#include <sys/mman.h>  // mmap() is defined in this header
#endif

#ifndef SSIZE_MAX
#define SSIZE_MAX LONG_MAX
#endif

enum
{
  MAX_FILES = 8192
};
static int _file_max = MAX_FILES;

static void file_initialize(void);

static bool _file_init = false;

#ifdef HAVE_LIBPTHREAD
#include <pthread.h>

static pthread_once_t _file_init_thread = PTHREAD_ONCE_INIT;
static pthread_mutex_t _file_mutex = PTHREAD_MUTEX_INITIALIZER;

#define FILE_LOCK() pthread_mutex_lock(&_file_mutex)
#define FILE_UNLOCK() pthread_mutex_unlock(&_file_mutex)
#define FILE_INIT() \
  if (_file_init == false) pthread_once(&_file_init_thread, file_initialize)

#else

#define FILE_LOCK()
#define FILE_UNLOCK()
#define FILE_INIT() \
  if (_file_init == false) file_initialize()
#endif

typedef struct
{
  int self;
  int flag;            // access and error flag
  int eof;             // end of file flag
  int fd;              // file descriptor used for read
  FILE *fp;            // FILE pointer used for write
  char *name;          // file name
  off_t size;          // file size
  off_t position;      // file position
  long access;         // file access
  off_t byteTrans;     //
  size_t blockSize;    // file block size
  int mode;            // file access mode
  int type;            // file type [1:open  2:fopen]
  int bufferType;      // buffer type [1:std  2:mmap]
  size_t bufferSize;   // file buffer size
  size_t mappedSize;   // mmap buffer size
  char *buffer;        // file buffer
  long bufferNumFill;  // number of buffer fill
  char *bufferPtr;     // file buffer pointer
  off_t bufferPos;
  off_t bufferStart;
  off_t bufferEnd;
  size_t bufferCnt;
  double time_in_sec;
} bfile_t;

enum FILE_Flags
{
  FILE_EOF = 010,
  FILE_ERROR = 020
};

enum
{
  MIN_BUF_SIZE = 131072
};

static const char *fbtname[] = { "unknown", "standard", "mmap" };
static const char *ftname[] = { "unknown", "open", "fopen" };

static size_t FileBufferSizeMin = MIN_BUF_SIZE;
static long FileBufferSizeEnv = -1;
static int FileBufferTypeEnv = 0;

static int FileTypeRead = FILE_TYPE_OPEN;
static int FileTypeWrite = FILE_TYPE_FOPEN;
static int FileFlagWrite = 0;

static int FileDebug = 0;  // If set to 1, debugging
static bool FileInfo = false;

static void file_table_print(void);

// A version string.
#undef LIBVERSION
#define LIBVERSION 1.9.2
#define XSTRING(x) #x
#define STRING(x) XSTRING(x)
static const char file_libvers[] = STRING(LIBVERSION);

/*
  21/05/2004  1.3.2 set min I/O Buffersize to 128k
  31/05/2005  1.4.0 replace fileTable by _fileList
  26/08/2005  1.4.1 fileClose with return value
                    checks for all fileptr
  01/09/2005  1.5.0 thread safe version
  06/11/2005  1.5.1 add filePtrEOF, filePtr, filePtrGetc
  03/02/2006  1.5.2 ansi C: define getpagesize and strdupx
  27/12/2007  1.6.0 add FILE_TYPE_FOPEN
  24/03/2008  1.6.1 add O_BINARY if available
                    remove default HAVE_MMAP
                    use HAVE_STRUCT_STAT_ST_BLKSIZE
  22/08/2010  1.7.0 refactor
  11/11/2010  1.7.1 update for changed interface of error.h
  02/02/2012  1.8.0 cleanup
  16/11/2012  1.8.1 added support for unbuffered write
  27/06/2013  1.8.2 added env. var. FILE_TYPE_WRITE (1:open; 2:fopen)
  29/04/2020  1.9.0 fileSetPos(): refactored
  30/04/2020  1.9.1 fileSetPos(): not initialized correctly (bug fix)
  16/03/2026  1.9.2 Code optimisation
 */

typedef struct _filePtrToIdx
{
  int idx;
  bfile_t *ptr;
  struct _filePtrToIdx *next;
} filePtrToIdx;

static filePtrToIdx *_fileList = NULL;
static filePtrToIdx *_fileAvail = NULL;

static void
file_list_new(void)
{
  assert(_fileList == NULL);
  _fileList = (filePtrToIdx *) malloc((size_t) _file_max * sizeof(filePtrToIdx));
}

static void
file_list_delete(void)
{
  if (_fileList)
  {
    free(_fileList);
    _fileList = NULL;
  }
}

static void
file_init_pointer(void)
{
  for (int i = 0; i < _file_max; i++)
  {
    _fileList[i].next = _fileList + i + 1;
    _fileList[i].idx = i;
    _fileList[i].ptr = 0;
  }

  _fileList[_file_max - 1].next = 0;
  _fileAvail = _fileList;
}

static bfile_t *
file_to_pointer(int idx)
{
  bfile_t *fileptr = NULL;

  FILE_INIT();

  if (idx >= 0 && idx < _file_max)
  {
    FILE_LOCK();
    fileptr = _fileList[idx].ptr;
    FILE_UNLOCK();
  }
  else
    Error("file index %d undefined!", idx);

  return fileptr;
}

// Create an index from a pointer
static int
file_from_pointer(bfile_t *ptr)
{
  int idx = -1;

  if (ptr)
  {
    FILE_LOCK();

    if (_fileAvail)
    {
      filePtrToIdx *newptr = _fileAvail;
      _fileAvail = _fileAvail->next;
      newptr->next = 0;
      idx = newptr->idx;
      newptr->ptr = ptr;

      if (FileDebug) Message("Pointer %p has idx %d from file list", ptr, idx);
    }
    else
    {
      Warning("Too many open files (limit is %d)!", _file_max);
      idx = -2;
    }

    FILE_UNLOCK();
  }
  else
    Error("Internal problem (pointer %p undefined)", ptr);

  return idx;
}

static void
file_init_entry(bfile_t *fileptr)
{
  fileptr->self = file_from_pointer(fileptr);

  fileptr->flag = 0;
  fileptr->fd = -1;
  fileptr->fp = NULL;
  fileptr->mode = 0;
  fileptr->size = 0;
  fileptr->name = NULL;
  fileptr->access = 0;
  fileptr->position = 0;
  fileptr->byteTrans = 0;
  fileptr->type = 0;
  fileptr->bufferType = 0;
  fileptr->bufferSize = 0;
  fileptr->mappedSize = 0;
  fileptr->buffer = NULL;
  fileptr->bufferNumFill = 0;
  fileptr->bufferStart = 0;
  fileptr->bufferEnd = -1;
  fileptr->bufferPos = 0;
  fileptr->bufferCnt = 0;
  fileptr->bufferPtr = NULL;
  fileptr->time_in_sec = 0.0;
}

static bfile_t *
file_new_entry(void)
{
  bfile_t *fileptr = (bfile_t *) malloc(sizeof(bfile_t));
  if (fileptr) file_init_entry(fileptr);
  return fileptr;
}

static void
file_delete_entry(bfile_t *fileptr)
{
  int idx = fileptr->self;

  FILE_LOCK();

  free(fileptr);

  _fileList[idx].next = _fileAvail;
  _fileList[idx].ptr = 0;
  _fileAvail = &_fileList[idx];

  FILE_UNLOCK();

  if (FileDebug) Message("Removed idx %d from file list", idx);
}

const char *
fileLibraryVersion(void)
{
  return file_libvers;
}

static int
file_pagesize(void)
{
#ifdef _SC_PAGESIZE
  return (int) sysconf(_SC_PAGESIZE);
#else
#ifndef POSIXIO_DEFAULT_PAGESIZE
#define POSIXIO_DEFAULT_PAGESIZE 4096
#endif
  return (int) POSIXIO_DEFAULT_PAGESIZE;
#endif
}

static double
file_time(void)
{
#ifdef HAVE_SYS_TIME_H
  struct timeval mytime;
  gettimeofday(&mytime, NULL);
  return (double) mytime.tv_sec + (double) mytime.tv_usec * 1.0e-6;
#else
  return 0;
#endif
}

void
fileDebug(int debug)
{
  FileDebug = debug;
  if (FileDebug) Message("Debug level %d", debug);
}

void *
filePtr(int fileID)
{
  return (void *) file_to_pointer(fileID);
}

static void
file_pointer_info(const char *caller, int fileID)
{
  if (FileDebug)
  {
    fprintf(stdout, "%-18s : ", caller);
    fprintf(stdout, "The fileID %d underlying pointer is not valid!", fileID);
    fprintf(stdout, "\n");
  }
}

int
fileSetBufferType(int fileID, int type)
{
  int ret = 0;

  bfile_t *fileptr = file_to_pointer(fileID);
  if (fileptr)
  {
    switch (type)
    {
      case FILE_BUFTYPE_STD:
      case FILE_BUFTYPE_MMAP: fileptr->bufferType = type; break;
      default: Error("File type %d not implemented!", type);
    }
  }

#ifndef HAVE_MMAP
  if (type == FILE_BUFTYPE_MMAP) ret = 1;
#endif

  return ret;
}

int
fileFlush(int fileID)
{
  int retval = 0;
  bfile_t *fileptr = file_to_pointer(fileID);
  if (fileptr)
  {
    FILE *fp = fileptr->fp;
    retval = fflush(fp);
    if (retval == 0) retval = fflush(fp);
    if (retval != 0) retval = errno;
  }

  return retval;
}

void
fileClearerr(int fileID)
{
  bfile_t *fileptr = file_to_pointer(fileID);
  if (fileptr)
  {
    if (fileptr->mode != 'r') clearerr(fileptr->fp);
  }
}

int
filePtrEOF(void *vfileptr)
{
  bfile_t *fileptr = (bfile_t *) vfileptr;
  return fileptr ? (fileptr->flag & FILE_EOF) != 0 : 0;
}

int
fileEOF(int fileID)
{
  bfile_t *fileptr = file_to_pointer(fileID);
  return fileptr ? (fileptr->flag & FILE_EOF) != 0 : 0;
}

void
fileRewind(int fileID)
{
  fileSetPos(fileID, (off_t) 0, SEEK_SET);
  fileClearerr(fileID);
}

off_t
fileGetPos(int fileID)
{
  off_t filepos = 0;

  bfile_t *fileptr = file_to_pointer(fileID);
  if (fileptr) { filepos = (fileptr->mode == 'r' && fileptr->type == FILE_TYPE_OPEN) ? fileptr->position : ftell(fileptr->fp); }

  if (FileDebug) Message("Position %ld", filepos);

  return filepos;
}

static int
file_set_buffer_pos(bfile_t *fileptr)
{
  off_t position = fileptr->position;
  if (position < fileptr->bufferStart || position > fileptr->bufferEnd)
  {
    fileptr->bufferPos = (fileptr->bufferType == FILE_BUFTYPE_STD) ? position : position - position % file_pagesize();
    fileptr->bufferCnt = 0;
    fileptr->bufferPtr = NULL;

    return 1;
  }

  return 0;
}

static void
file_check_buffer_pos(bfile_t *fileptr)
{
  if (fileptr->bufferPos != fileptr->bufferEnd + 1)
  {
    if (FileDebug) Message("Reset buffer pos from %ld to %ld", fileptr->bufferPos, fileptr->bufferEnd + 1);

    fileptr->bufferPos = fileptr->bufferEnd + 1;
  }
}

static void
file_seek_buffer(bfile_t *fileptr, off_t offset, int whence)
{
  if (whence == SEEK_SET)
  {
    fileptr->position = offset;
    if (!file_set_buffer_pos(fileptr))
    {
      file_check_buffer_pos(fileptr);
      fileptr->bufferCnt = (size_t) (fileptr->bufferEnd - fileptr->position) + 1;
      fileptr->bufferPtr = fileptr->buffer + fileptr->position - fileptr->bufferStart;
    }
  }
  else if (whence == SEEK_CUR)
  {
    fileptr->position += offset;
    if (!file_set_buffer_pos(fileptr))
    {
      file_check_buffer_pos(fileptr);
      fileptr->bufferCnt -= (size_t) offset;
      fileptr->bufferPtr += offset;
    }
  }
}

int
fileSetPos(int fileID, off_t offset, int whence)
{
  int status = 0;

  if (FileDebug) Message("Offset %8ld  Whence %3d", (long) offset, whence);

  bfile_t *fileptr = file_to_pointer(fileID);
  if (fileptr == 0)
  {
    file_pointer_info(__func__, fileID);
    return 1;
  }

  if (whence != SEEK_SET && whence != SEEK_CUR) Error("Whence = %d not implemented", whence);

  if (fileptr->mode == 'r' && fileptr->type == FILE_TYPE_OPEN)
    file_seek_buffer(fileptr, offset, whence);
  else
    status = fseek(fileptr->fp, offset, whence);

  if ((fileptr->position < fileptr->size) && ((fileptr->flag & FILE_EOF) != 0)) fileptr->flag -= FILE_EOF;

  return status;
}

static void
file_table_print(void)
{
  int lprintHeader = 1;

  for (int fileID = 0; fileID < _file_max; fileID++)
  {
    bfile_t *fileptr = file_to_pointer(fileID);
    if (fileptr)
    {
      if (lprintHeader)
      {
        fprintf(stderr, "\nFile table:\n");
        fprintf(stderr, "+-----+---------+");
        fprintf(stderr, "----------------------------------------------------+\n");
        fprintf(stderr, "|  ID |  Mode   |");
        fprintf(stderr, "  Name                                              |\n");
        fprintf(stderr, "+-----+---------+");
        fprintf(stderr, "----------------------------------------------------+\n");
        lprintHeader = 0;
      }

      fprintf(stderr, "| %3d | ", fileID);

      switch (fileptr->mode)
      {
        case 'r': fprintf(stderr, "read   "); break;
        case 'w': fprintf(stderr, "write  "); break;
        case 'a': fprintf(stderr, "append "); break;
        default: fprintf(stderr, "unknown");
      }

      fprintf(stderr, " | %-51s|\n", fileptr->name);
    }
  }

  if (lprintHeader == 0)
  {
    fprintf(stderr, "+-----+---------+");
    fprintf(stderr, "----------------------------------------------------+\n");
  }
}

char *
fileInqName(int fileID)
{
  bfile_t *fileptr = file_to_pointer(fileID);
  return fileptr ? fileptr->name : NULL;
}

int
fileInqMode(int fileID)
{
  bfile_t *fileptr = file_to_pointer(fileID);
  return fileptr ? fileptr->mode : 0;
}

static long
file_getenv(const char *envName)
{
  long envValue = -1;
  const char *envString = getenv(envName);
  if (!envString) return envValue;

  long fact = 1;
  for (int i = 0, n = (int) strlen(envString); i < n; i++)
  {
    int c = (int) envString[i];
    if (!isdigit(c))
    {
      switch (tolower(c))
      {
        case 'k': fact = 1024; break;
        case 'm': fact = 1048576; break;
        case 'g': fact = 1073741824; break;
        default:
          fact = 0;
          Warning("Invalid number string in %s: %s", envName, envString);
          Warning("%s must comprise only digits [0-9].", envName);
      }
      break;
    }
  }

  if (fact) envValue = fact * atol(envString);

  if (FileDebug) Message("Set %s to %ld", envName, envValue);

  return envValue;
}

static void
file_initialize(void)
{
  long value;

  FileInfo = (file_getenv("FILE_INFO") > 0);

  value = file_getenv("FILE_DEBUG");
  if (value >= 0) FileDebug = (int) value;

  value = file_getenv("FILE_MAX");
  if (value >= 0) _file_max = (int) value;

  if (FileInfo) fprintf(stderr, "FILE_MAX = %d\n", _file_max);

  value = file_getenv("FILE_BUFSIZE");
  if (value >= 0) { FileBufferSizeEnv = value; }
  else
  {
    value = file_getenv("GRIB_API_IO_BUFFER_SIZE");
    if (value >= 0) FileBufferSizeEnv = value;
  }

  if (FileInfo) fprintf(stderr, "FILE_BUFSIZE = %ld\n", FileBufferSizeEnv);

  value = file_getenv("FILE_TYPE_READ");
  if (value > 0)
  {
    switch (value)
    {
      case FILE_TYPE_OPEN:
      case FILE_TYPE_FOPEN: FileTypeRead = (int) value; break;
      default: Warning("File type %ld not implemented!", value);
    }
  }

  if (FileInfo)
    fprintf(stderr, "FILE_TYPE_READ = %d [%d:%s  %d:%s]\n", FileTypeRead, FILE_TYPE_OPEN, ftname[FILE_TYPE_OPEN], FILE_TYPE_FOPEN,
            ftname[FILE_TYPE_FOPEN]);

  value = file_getenv("FILE_TYPE_WRITE");
  if (value > 0)
  {
    switch (value)
    {
      case FILE_TYPE_OPEN:
      case FILE_TYPE_FOPEN: FileTypeWrite = (int) value; break;
      default: Warning("File type %ld not implemented!", value);
    }
  }

  if (FileInfo)
    fprintf(stderr, "FILE_TYPE_WRITE = %d [%d:%s  %d:%s]\n", FileTypeWrite, FILE_TYPE_OPEN, ftname[FILE_TYPE_OPEN], FILE_TYPE_FOPEN,
            ftname[FILE_TYPE_FOPEN]);

#ifdef O_NONBLOCK
  FileFlagWrite = O_NONBLOCK;
#endif
  char *envString = getenv("FILE_FLAG_WRITE");
  if (envString)
  {
#ifdef O_NONBLOCK
    if (strcmp(envString, "NONBLOCK") == 0) FileFlagWrite = O_NONBLOCK;
#endif
  }

  value = file_getenv("FILE_BUFTYPE");
#ifndef HAVE_MMAP
  if (value == FILE_BUFTYPE_MMAP)
  {
    Warning("MMAP not available!");
    value = 0;
  }
#endif
  if (value > 0)
  {
    switch (value)
    {
      case FILE_BUFTYPE_STD:
      case FILE_BUFTYPE_MMAP: FileBufferTypeEnv = (int) value; break;
      default: Warning("File buffer type %ld not implemented!", value);
    }
  }

  if (FileInfo)
    fprintf(stderr, "FILE_BUFTYPE = %d [%d:%s  %d:%s]\n", FileBufferTypeEnv, FILE_BUFTYPE_STD, fbtname[FILE_BUFTYPE_STD],
            FILE_BUFTYPE_MMAP, fbtname[FILE_BUFTYPE_MMAP]);

  file_list_new();
  atexit(file_list_delete);

  FILE_LOCK();
  file_init_pointer();
  FILE_UNLOCK();

  if (FileDebug) atexit(file_table_print);

  _file_init = true;
}

static size_t
file_get_buffersize(bfile_t *fileptr)
{
  size_t buffersize = 0;

  if (FileBufferSizeEnv >= 0) { buffersize = (size_t) FileBufferSizeEnv; }
  else if (fileptr->bufferSize > 0) { buffersize = fileptr->bufferSize; }
  else
  {
    buffersize = fileptr->blockSize * 4;
    if (buffersize < FileBufferSizeMin) buffersize = FileBufferSizeMin;
  }

  return buffersize;
}

static void
file_set_buffer(bfile_t *fileptr)
{
  size_t buffersize = 0;

  if (fileptr->mode == 'r')
  {
    if (FileBufferTypeEnv) { fileptr->bufferType = FileBufferTypeEnv; }
    else if (fileptr->bufferType == 0) { fileptr->bufferType = FILE_BUFTYPE_STD; }

    buffersize = file_get_buffersize(fileptr);

    if ((size_t) fileptr->size < buffersize) buffersize = (size_t) fileptr->size;

    if (fileptr->bufferType == FILE_BUFTYPE_MMAP)
    {
      size_t blocksize = (size_t) file_pagesize();
      size_t minblocksize = 4 * blocksize;
      buffersize = buffersize - buffersize % minblocksize;

      if (buffersize < (size_t) fileptr->size && buffersize < minblocksize) buffersize = minblocksize;
    }

    if (buffersize == 0) buffersize = 1;
  }
  else
  {
    fileptr->bufferType = FILE_BUFTYPE_STD;
    buffersize = file_get_buffersize(fileptr);
  }

  if (fileptr->bufferType == FILE_BUFTYPE_STD || fileptr->type == FILE_TYPE_FOPEN)
  {
    if (buffersize > 0)
    {
      fileptr->buffer = (char *) malloc(buffersize);
      if (fileptr->buffer == NULL) SysError("Allocation of file buffer failed!");
    }
  }

  if (fileptr->type == FILE_TYPE_FOPEN)
    if (setvbuf(fileptr->fp, fileptr->buffer, fileptr->buffer ? _IOFBF : _IONBF, buffersize)) SysError("setvbuf failed!");

  fileptr->bufferSize = buffersize;
}

static int
file_fill_buffer(bfile_t *fileptr)
{
  ssize_t nread;
  long offset = 0;

  if (FileDebug) Message("file ptr = %p  Cnt = %ld", fileptr, fileptr->bufferCnt);
  if ((fileptr->flag & FILE_EOF) != 0) return EOF;
  if (fileptr->buffer == NULL) file_set_buffer(fileptr);
  if (fileptr->bufferSize == 0) return EOF;

  int fd = fileptr->fd;

#ifdef HAVE_MMAP
  if (fileptr->bufferType == FILE_BUFTYPE_MMAP)
  {
    if (fileptr->bufferPos >= fileptr->size) { nread = 0; }
    else
    {
#ifdef CDI
      xassert(fileptr->bufferSize <= SSIZE_MAX);
#endif
      nread = (ssize_t) fileptr->bufferSize;
      if ((nread + fileptr->bufferPos) > fileptr->size) nread = fileptr->size - fileptr->bufferPos;

      if (fileptr->buffer)
      {
        int ret = munmap(fileptr->buffer, fileptr->mappedSize);
        if (ret == -1) SysError("munmap error for read %s", fileptr->name);
        fileptr->buffer = NULL;
      }

      fileptr->mappedSize = (size_t) nread;
      fileptr->buffer = (char *) mmap(NULL, (size_t) nread, PROT_READ, MAP_PRIVATE, fd, fileptr->bufferPos);
      if (fileptr->buffer == MAP_FAILED) SysError("mmap error for read %s", fileptr->name);
      offset = fileptr->position - fileptr->bufferPos;
    }
  }
  else
#endif
  {
    off_t retseek = lseek(fileptr->fd, fileptr->bufferPos, SEEK_SET);
    if (retseek == (off_t) -1) SysError("lseek error at pos %ld file %s", (long) fileptr->bufferPos, fileptr->name);

    nread = read(fd, fileptr->buffer, fileptr->bufferSize);
    if (nread > 0) offset = fileptr->position - fileptr->bufferPos;
  }

  if (nread <= 0)
  {
    fileptr->flag |= (nread == 0) ? FILE_EOF : FILE_ERROR;
    fileptr->bufferCnt = 0;
    return EOF;
  }

  fileptr->bufferPtr = fileptr->buffer;
  fileptr->bufferCnt = (size_t) nread;

  fileptr->bufferStart = fileptr->bufferPos;
  fileptr->bufferPos += nread;
  fileptr->bufferEnd = fileptr->bufferPos - 1;

  if (FileDebug)
  {
    Message("fileID = %d  Val     = %d", fileptr->self, (int) fileptr->buffer[0]);
    Message("fileID = %d  Start   = %ld", fileptr->self, fileptr->bufferStart);
    Message("fileID = %d  End     = %ld", fileptr->self, fileptr->bufferEnd);
    Message("fileID = %d  nread   = %ld", fileptr->self, nread);
    Message("fileID = %d  offset  = %ld", fileptr->self, offset);
    Message("fileID = %d  Pos     = %ld", fileptr->self, fileptr->bufferPos);
    Message("fileID = %d  postion = %ld", fileptr->self, fileptr->position);
  }

  if (offset > 0)
  {
    if (offset > nread) Error("Internal problem with buffer handling. nread = %d offset = %d", nread, offset);
    fileptr->bufferPtr += offset;
    fileptr->bufferCnt -= (size_t) offset;
  }

  fileptr->bufferNumFill++;

  return (unsigned char) *fileptr->bufferPtr;
}

static void
file_copy_from_buffer(bfile_t *fileptr, void *ptr, size_t size)
{
  if (FileDebug) Message("size = %ld  Cnt = %ld", size, fileptr->bufferCnt);

  if (fileptr->bufferCnt < size) Error("Buffer too small. bufferCnt = %d", fileptr->bufferCnt);

  if (size == 1)
  {
    ((char *) ptr)[0] = fileptr->bufferPtr[0];
    fileptr->bufferPtr++;
    fileptr->bufferCnt--;
  }
  else
  {
    memcpy(ptr, fileptr->bufferPtr, size);
    fileptr->bufferPtr += size;
    fileptr->bufferCnt -= size;
  }
}

static size_t
file_read_from_buffer(bfile_t *fileptr, void *ptr, size_t size)
{
  size_t nread;
  size_t offset = 0;

  if (FileDebug) Message("size = %ld  Cnt = %ld", size, (long) fileptr->bufferCnt);

  if (((long) fileptr->bufferCnt) < 0L) Error("Internal problem. bufferCnt = %ld", (long) fileptr->bufferCnt);

  size_t rsize = size;

  while (fileptr->bufferCnt < rsize)
  {
    nread = fileptr->bufferCnt;
    // fprintf(stderr, "rsize = %d nread = %d\n", (int) rsize, (int) nread);
    if (nread > (size_t) 0) file_copy_from_buffer(fileptr, (char *) ptr + offset, nread);
    offset += nread;
    rsize = (nread < rsize) ? rsize - nread : 0;

    if (file_fill_buffer(fileptr) == EOF) break;
  }

  nread = size - offset;

  if (fileptr->bufferCnt < nread) nread = fileptr->bufferCnt;

  if (nread > (unsigned) 0) file_copy_from_buffer(fileptr, (char *) ptr + offset, nread);

  return (nread + offset);
}

void
fileSetBufferSize(int fileID, long buffersize)
{
#ifdef CDI
  xassert(buffersize >= 0);
#endif
  bfile_t *fileptr = file_to_pointer(fileID);
  if (fileptr) fileptr->bufferSize = (size_t) buffersize;
}

/*
 *   Open a file. Returns file ID, or -1 on error
 */
int
fileOpen(const char *filename, const char *mode)
#ifdef CDI
{
  int (*myFileOpen)(const char *filename, const char *mode)
      = (int (*)(const char *, const char *)) namespaceSwitchGet(NSSWITCH_FILE_OPEN).func;
  return myFileOpen(filename, mode);
}

int
fileOpen_serial(const char *filename, const char *mode)
#endif
{
  FILE *fp = NULL;  // file pointer    (used for write)
  int fd = -1;      // file descriptor (used for read)
  int fileID = FILE_UNDEFID;
  struct stat filestat;
  bfile_t *fileptr = NULL;

  FILE_INIT();

  int fmode = tolower((int) mode[0]);

  switch (fmode)
  {
    case 'r':
      if (FileTypeRead == FILE_TYPE_FOPEN)
        fp = fopen(filename, "rb");
      else
        fd = open(filename, O_RDONLY | O_BINARY);
      break;
    case 'x': fp = fopen(filename, "rb"); break;
    case 'w':
      if (FileTypeWrite == FILE_TYPE_FOPEN)
        fp = fopen(filename, "wb");
      else
        fd = open(filename, O_CREAT | O_TRUNC | O_WRONLY | O_BINARY | FileFlagWrite, 0666);
      break;
    case 'a': fp = fopen(filename, "ab"); break;
    default: Error("Mode %c unexpected!", fmode);
  }

  if (FileDebug && fp == NULL && fd == -1) Message("Open failed on %s mode %c errno %d", filename, fmode, errno);

  if (fp)
  {
    if (stat(filename, &filestat) != 0) return fileID;

    fileptr = file_new_entry();
    if (fileptr)
    {
      fileID = fileptr->self;
      fileptr->fp = fp;
    }
  }
  else if (fd >= 0)
  {
    if (fstat(fd, &filestat) != 0) return fileID;

    fileptr = file_new_entry();
    if (fileptr)
    {
      fileID = fileptr->self;
      fileptr->fd = fd;
    }
  }

  if (fileID >= 0)
  {
    fileptr->mode = fmode;
    fileptr->name = strdup(filename);

#ifdef HAVE_STRUCT_STAT_ST_BLKSIZE
    fileptr->blockSize = (size_t) filestat.st_blksize;
#else
    fileptr->blockSize = (size_t) 4096;
#endif

    // clang-format off
    if      (fmode == 'r') { fileptr->type = FileTypeRead; }
    else if (fmode == 'w') { fileptr->type = FileTypeWrite; }
    else                   { fileptr->type = FILE_TYPE_FOPEN; }
    // clang-format on

    if (fmode == 'r') { fileptr->size = filestat.st_size; }

    // if (fileptr->type == FILE_TYPE_FOPEN) file_set_buffer(fileptr);
    file_set_buffer(fileptr);

    if (FileDebug) Message("File %s opened with ID %d", filename, fileID);
  }

  return fileID;
}

/*
 *   Close a file.
 */
int
fileClose(int fileID)
#ifdef CDI
{
  int (*myFileClose)(int fileID) = (int (*)(int)) namespaceSwitchGet(NSSWITCH_FILE_CLOSE).func;
  return myFileClose(fileID);
}

int
fileClose_serial(int fileID)
#endif
{
  double rout = 0;

  bfile_t *fileptr = file_to_pointer(fileID);
  if (fileptr == NULL)
  {
    file_pointer_info(__func__, fileID);
    return 1;
  }

  const char *name = fileptr->name;

  if (FileDebug) Message("fileID = %d  filename = %s", fileID, name);

  if (FileInfo)
  {
    fprintf(stderr, "____________________________________________\n");
    fprintf(stderr, " file ID          : %d\n", fileID);
    fprintf(stderr, " file name        : %s\n", fileptr->name);
    fprintf(stderr, " file type        : %d (%s)\n", fileptr->type, ftname[fileptr->type]);

    if (fileptr->type == FILE_TYPE_FOPEN)
      fprintf(stderr, " file pointer     : %p\n", (void *) fileptr->fp);
    else
    {
      fprintf(stderr, " file descriptor  : %d\n", fileptr->fd);
      fprintf(stderr, " file flag        : %d\n", FileFlagWrite);
    }
    fprintf(stderr, " file mode        : %c\n", fileptr->mode);

    if (sizeof(off_t) > sizeof(long))
    {
#ifdef _WIN32
      fprintf(stderr, " file size        : %I64d\n", (long long) fileptr->size);
      if (fileptr->type == FILE_TYPE_OPEN) fprintf(stderr, " file position    : %I64d\n", (long long) fileptr->position);
      fprintf(stderr, " bytes transfered : %I64d\n", (long long) fileptr->byteTrans);
#else
      fprintf(stderr, " file size        : %lld\n", (long long) fileptr->size);
      if (fileptr->type == FILE_TYPE_OPEN) fprintf(stderr, " file position    : %lld\n", (long long) fileptr->position);
      fprintf(stderr, " bytes transfered : %lld\n", (long long) fileptr->byteTrans);
#endif
    }
    else
    {
      fprintf(stderr, " file size        : %ld\n", (long) fileptr->size);
      if (fileptr->type == FILE_TYPE_OPEN) fprintf(stderr, " file position    : %ld\n", (long) fileptr->position);
      fprintf(stderr, " bytes transfered : %ld\n", (long) fileptr->byteTrans);
    }

    if (fileptr->time_in_sec > 0) rout = (double) fileptr->byteTrans / (1024. * 1024. * fileptr->time_in_sec);

    fprintf(stderr, " wall time [s]    : %.2f\n", fileptr->time_in_sec);
    fprintf(stderr, " data rate [MB/s] : %.1f\n", rout);

    fprintf(stderr, " file access      : %ld\n", fileptr->access);
    if (fileptr->mode == 'r' && fileptr->type == FILE_TYPE_OPEN)
    {
      fprintf(stderr, " buffer type      : %d (%s)\n", fileptr->bufferType, fbtname[fileptr->bufferType]);
      fprintf(stderr, " num buffer fill  : %ld\n", fileptr->bufferNumFill);
    }
    fprintf(stderr, " buffer size      : %lu\n", (unsigned long) fileptr->bufferSize);
    fprintf(stderr, " block size       : %lu\n", (unsigned long) fileptr->blockSize);
    fprintf(stderr, " page size        : %d\n", file_pagesize());
    fprintf(stderr, "--------------------------------------------\n");
  }

  if (fileptr->type == FILE_TYPE_FOPEN)
  {
    if (fclose(fileptr->fp) == EOF) SysError("EOF returned for close of %s!", name);
  }
  else
  {
#ifdef HAVE_MMAP
    if (fileptr->buffer && fileptr->mappedSize)
    {
      if (munmap(fileptr->buffer, fileptr->mappedSize) == -1) SysError("munmap error for close %s", fileptr->name);
      fileptr->buffer = NULL;
    }
#endif
    if (close(fileptr->fd) == -1) SysError("EOF returned for close of %s!", name);
  }

  free((void *) fileptr->name);
  free((void *) fileptr->buffer);

  file_delete_entry(fileptr);

  return 0;
}

int
filePtrGetc(void *vfileptr)
{
  int ivalue = EOF;

  bfile_t *fileptr = (bfile_t *) vfileptr;
  if (fileptr)
  {
    if (fileptr->mode == 'r' && fileptr->type == FILE_TYPE_OPEN)
    {
      int fillret = (fileptr->bufferCnt == 0) ? file_fill_buffer(fileptr) : 0;
      if (fillret >= 0)
      {
        ivalue = (unsigned char) *fileptr->bufferPtr++;
        fileptr->bufferCnt--;
        fileptr->position++;

        fileptr->byteTrans++;
        fileptr->access++;
      }
    }
    else
    {
      ivalue = fgetc(fileptr->fp);
      if (ivalue >= 0)
      {
        fileptr->byteTrans++;
        fileptr->access++;
      }
      else
        fileptr->flag |= FILE_EOF;
    }
  }

  return ivalue;
}

int
fileGetc(int fileID)
{
  bfile_t *fileptr = file_to_pointer(fileID);
  return filePtrGetc((void *) fileptr);
}

size_t
filePtrRead(void *vfileptr, void *restrict ptr, size_t size)
{
  size_t nread = 0;

  bfile_t *fileptr = (bfile_t *) vfileptr;
  if (fileptr)
  {
    if (fileptr->mode == 'r' && fileptr->type == FILE_TYPE_OPEN) { nread = file_read_from_buffer(fileptr, ptr, size); }
    else
    {
      nread = fread(ptr, 1, size, fileptr->fp);
      if (nread != size) fileptr->flag |= (nread == 0) ? FILE_EOF : FILE_ERROR;
    }

    fileptr->position += (off_t) nread;
    fileptr->byteTrans += (off_t) nread;
    fileptr->access++;
  }

  if (FileDebug) Message("size %ld  nread %ld", size, nread);

  return nread;
}

size_t
fileRead(int fileID, void *restrict ptr, size_t size)
{
  size_t nread = 0;

  bfile_t *fileptr = file_to_pointer(fileID);
  if (fileptr)
  {
    double t_begin = (FileInfo) ? file_time() : 0.0;

    if (fileptr->type == FILE_TYPE_OPEN) { nread = file_read_from_buffer(fileptr, ptr, size); }
    else
    {
      nread = fread(ptr, 1, size, fileptr->fp);
      if (nread != size) fileptr->flag |= (nread == 0) ? FILE_EOF : FILE_ERROR;
    }

    if (FileInfo) fileptr->time_in_sec += file_time() - t_begin;

    fileptr->position += (off_t) nread;
    fileptr->byteTrans += (off_t) nread;
    fileptr->access++;
  }

  if (FileDebug) Message("size %ld  nread %ld", size, nread);

  return nread;
}

size_t
fileWrite(int fileID, const void *restrict ptr, size_t size)
{
  size_t nwrite = 0;

  bfile_t *fileptr = file_to_pointer(fileID);
  if (fileptr)
  {
    double t_begin = (FileInfo) ? file_time() : 0.0;

    if (fileptr->type == FILE_TYPE_FOPEN) { nwrite = fwrite(ptr, 1, size, fileptr->fp); }
    else
    {
      ssize_t temp = write(fileptr->fd, ptr, size);
      if (temp == -1) perror("error writing to file");
      nwrite = (temp == -1) ? 0 : (size_t) temp;
    }

    if (FileInfo) fileptr->time_in_sec += file_time() - t_begin;

    fileptr->position += (off_t) nwrite;
    fileptr->byteTrans += (off_t) nwrite;
    fileptr->access++;
  }

  return nwrite;
}
/*
 * Local Variables:
 * c-file-style: "Java"
 * c-basic-offset: 2
 * indent-tabs-mode: nil
 * show-trailing-whitespace: t
 * require-trailing-newline: t
 * End:
 */
